HsaEX6032476 @ hg19
Exon Skipping
Gene
ENSG00000134215 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:12659]
Coordinates
chr1:108309069-108313350:-
Coord C1 exon
chr1:108313258-108313350
Coord A exon
chr1:108311063-108311131
Coord C2 exon
chr1:108309069-108309172
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTCTTTCCTGGTAGTAT
3' ss Score
7.94
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AAATGTCCAGAAAATGATATACGAAGTTGTTGTCTAGCAGAAATTAAGCAGACAGAAGAAAAATATACAGAAACTTTGGAGTCAATAGAAAAG
Seq A exon
TATTTCATGGCACCACTAAAAAGATTTCTGACAGCAGCAGAATTTGATTCAGTATTCATCAACATTCCT
Seq C2 exon
GAACTTGTAAAACTTCATCGGAACCTAATGCAAGAGATTCATGATTCCATTGTAAATAAAAATGACCAGAACTTGTACCAAGTTTTTATTAACTACAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(11.4=64.5)
A:
PF0062115=RhoGEF=FE(12.6=100)
C2:
PF0062115=RhoGEF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGAAAATGATATACGAAGTTG
R:
TGGTACAAGTTCTGGTCATTTTTATT
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)