MmuEX6073518 @ mm10
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109503410-109508887:+
Coord C1 exon
chr3:109503410-109503502
Coord A exon
chr3:109506396-109506464
Coord C2 exon
chr3:109508784-109508887
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCTCCCCTGGTAGTAT
3' ss Score
7.94
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AAATCACAAGAAAATGATATACGGAGTTGTTGCCTAGCAGAAATTAGGCAGACAGAAGAAAAATACACAGAAACGTTGGAGTCAATAGAAAAA
Seq A exon
TATTTCATGGCACCATTGAAAAGATTTCTGACGGCGGCGGAATTTGATTCAGTATTTATTAACATTCCT
Seq C2 exon
GACCTTGTAAAAGTTCATCGGAGCTTAATGCAAGAGATTCATGATTCCATTGTAAATAAAGATGACCAGAACTTGTATCAAGTTTTTATTAACTACAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721-'11-22,'11-16,15-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(11.4=64.5)
A:
PF0062115=RhoGEF=FE(12.6=100)
C2:
PF0062115=RhoGEF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAATGATATACGGAGTTGTTGCC
R:
CTTGATACAAGTTCTGGTCATCTTT
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types