BtaEX6016541 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003245 | BCAR3
Description
Bos taurus breast cancer anti-estrogen resistance 3 (BCAR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001024483]
Coordinates
chr3:50055412-50063029:+
Coord C1 exon
chr3:50055412-50055527
Coord A exon
chr3:50060186-50060357
Coord C2 exon
chr3:50062918-50063029
Length
172 bp
Sequences
Splice sites
3' ss Seq
GCTCATCTCCTTCCTTTCAGACA
3' ss Score
9.26
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTCGCGAGGATACTTGAAGTCTCGGAAGAGATGAGGAAGAACATGGGCGTGAACTCAGGGCTGGAGCTCATCACCTTGCCTTATGGTCACCAACTGCGCCTGGACATCATTGAAAG
Seq A exon
ACACAACACGATGGCCATCGGCATCGCAGTGGACATTCTGGGCTGCACGGGCAGTCTGGAGGACAGAGCAGCCACCCTCAATAAGATCATCCAGGTGGCAGTGGAGCTGAAAGACTCCATGGGGGACCTCTATTCTTTCTCAGCCATCATGAAGGCCTTGGAAATGCCACAG
Seq C2 exon
ATCACACGGTTAGAAAAAACGTGGACTGCCCTGCGGCACCAGTACACACAAACCGCCATCCTCTATGAGAAACAGCTGAAGCCTTTCAGCAAAGTCCTGCATGAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003245-'18-22,'18-20,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(19.1=100)
A:
PF0061714=RasGEF=FE(28.6=100)
C2:
PF0061714=RasGEF=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACTTGAAGTCTCGGAAGA
R:
TGCCTTCATGCAGGACTTTGC
Band lengths:
218-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]