RnoEX0014333 @ rn6
Exon Skipping
Gene
ENSRNOG00000013737 | Bcar3
Description
BCAR3, NSP family adaptor protein [Source:RGD Symbol;Acc:1311688]
Coordinates
chr2:226668747-226674502:+
Coord C1 exon
chr2:226668747-226668862
Coord A exon
chr2:226672798-226672969
Coord C2 exon
chr2:226674391-226674502
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTTGGCCTTCTCCTATCTAGACA
3' ss Score
8.15
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTGCTAGGATACTGGAAGTCTCTGAAGACATGAAGAGGAGCATGGGCGTGAGCTCGGGACTGGAACTCATTACCTTGCCTCACGGACGCCAGCTGCGCCTGGACATTATTGAAAG
Seq A exon
ACACAACACCATGGCCATTGGCATTGCTGTGGACATTCTGGGCTGCACGGGCACATTGGAGAACCGGGCAGGAACCCTTAATAAGATCATCCAGGTGGCAATGGAACTGAAGGACACCATGGGAGACCTCTATTCCTTCTCAGCCATCATGAAAGCCCTCGAGATGCCTCAG
Seq C2 exon
ATCACAAGGTTAGAAAAAACATGGACGGCTCTGAGGCACCACTACACGCAAACAGCCATCCTCTACGAAAAGCAGTTGAAGCCCTTTAGCAAAATCCTGCATGAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013737-'14-10,'14-9,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(19.9=100)
A:
PF0061714=RasGEF=FE(29.8=100)
C2:
PF0061714=RasGEF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACATGAAGAGGAGCATGG
R:
TGCCTTCATGCAGGATTTTGC
Band lengths:
202-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]