DreEX6048935 @ danRer10
Exon Skipping
Gene
ENSDARG00000016981 | bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:ZFIN;Acc:ZDB-GENE-080513-4]
Coordinates
chr8:15053138-15054062:-
Coord C1 exon
chr8:15053947-15054062
Coord A exon
chr8:15053370-15053541
Coord C2 exon
chr8:15053138-15053249
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGCTGGATCTTCTCTAACAGGCA
3' ss Score
7.54
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTGCCAGGATACTGAATGTTTCTGAGGAGGTGAAAGGTCAGATGGGTGTGAGCTCCGGGCTGGAGCTGGTGACCCTTCCTCATGGACGACAGCTGAGGCTGGACCTCATAGAGAG
Seq A exon
GCATAACACTATGGCGATCGGAGTGGCTGTGGACATCCTGGGGTGTACAGGAAGTCTGGAGGAGCGAGCAGCCACACTAAACCGGATCATTCTGGTGGCTCTGGAGCTCAAAGACTCCATGGGGGATCTTTATGCCTTTTCCTCCATAATGAAAGCACTGGACATGCCTCAG
Seq C2 exon
ATTACCAGACTGGATCACACATGGACTAGCTTGCGGAGGAAATATACACAGACTGCCATCATTTATGAGAAATCTTTAAAACCGTTCTACAAAGGACTCTATGAAGGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016981-'24-18,'24-17,25-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(22.5=100)
A:
PF0061714=RasGEF=FE(33.7=100)
C2:
PF0061714=RasGEF=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGAATGTTTCTGAGGAGGTGA
R:
CACCTCCTTCATAGAGTCCTTTGT
Band lengths:
218-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]