MmuEX6073841 @ mm10
Exon Skipping
Gene
ENSMUSG00000028121 | Bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:MGI Symbol;Acc:MGI:1352501]
Coordinates
chr3:122519263-122525035:+
Coord C1 exon
chr3:122519263-122519378
Coord A exon
chr3:122523169-122523340
Coord C2 exon
chr3:122524924-122525035
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGGTCTTCTCCTTAGGCA
3' ss Score
10.53
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTGCTAGGATACTCGAAGTCTCTGAAGACAGGAAGAGGAGCATGGGTGTGAGCTCTGGGTTGGAGCTCATTACTTTACCTCATGGACGGCAGCTGCGCCTGGACATCATCGAGAG
Seq A exon
GCACAACACCATGGCCATTGGCATTGCTGTGGACATTCTGGGCTGCACAGGCACACTGGAGAACCGAGCGGGTACCCTCAATAAGATCATCCAGGTGGCGGTGGAACTGAAGGATGCCATGGGAGACCTCTATGCTTTCTCTGCCATCATGAAAGCCCTGGAGATGCCTCAG
Seq C2 exon
ATCACAAGGTTAGAGAAAACATGGACGGCTCTGAGGCACCACTACACGCAGACAGCCATCCTCTATGAGAAGCAGTTGAAGCCCTTTAGCAAAATCCTGCATGAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028121-'54-37,'54-35,56-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(19.2=100)
A:
PF0061714=RasGEF=FE(28.8=100)
C2:
PF0061714=RasGEF=FE(18.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGACAGGAAGAGGAGCA
R:
TGCCTTCATGCAGGATTTTGC
Band lengths:
204-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types