BtaEX6016576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50498611-50506601:-
Coord C1 exon
chr3:50506533-50506601
Coord A exon
chr3:50505609-50505732
Coord C2 exon
chr3:50498611-50498678
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGATTATTTTTGGATTCCAGGGT
3' ss Score
6.88
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCATTACAATG
Seq A exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
Seq C2 exon
CTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393-'20-14,'20-13,22-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000001831fB4451
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTTATTTGCTCTGTCTGCAGT
R:
TGGTCTTGTAATCATTTAATGCCTCC
Band lengths:
130-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]