GgaEX6044242 @ galGal4
Exon Skipping
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12944392-12947833:-
Coord C1 exon
chr8:12947765-12947833
Coord A exon
chr8:12946884-12947007
Coord C2 exon
chr8:12944392-12944459
Length
124 bp
Sequences
Splice sites
3' ss Seq
TATATATTTCTAAATTCTAGGGT
3' ss Score
8.4
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTTATACATTCATTTGCTCAGTTTGCAGTTCTGGACCAGAATACCTCAAACGTTTACCCTTGAGATG
Seq A exon
GGTAGATATAGCACATCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATACTTTGATTCGGAGCTTGAACTCATGGCGTACATAAATGAAAACTGGGATAGATTACATCCTGGTGAG
Seq C2 exon
CTGGCAGATACACCAAAATCTGAAAGATATGAGCATGTACTGGAGGCATTAAATGATTACAAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911-'17-16,'17-13,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTCATTTGCTCAGTTTGCAGT
R:
TGGTCTTGTAATCATTTAATGCCTCC
Band lengths:
130-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]