DreEX0047736 @ danRer10
Exon Skipping
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10827722-10832569:-
Coord C1 exon
chr2:10832501-10832569
Coord A exon
chr2:10829499-10829622
Coord C2 exon
chr2:10827722-10827789
Length
124 bp
Sequences
Splice sites
3' ss Seq
CATGTTGTCTTCATTCACAGGGT
3' ss Score
10.18
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
GTTCTATCTATTTATTTGTTCAGTTTGTAATAGTGGACCAGAGTACCTCAAACGCCTCCCTCTGAGATG
Seq A exon
GGTAGACGTTGCACACCTGAGCCTCTATAACCTGAGCGTCATTCATAAAAAGAAATATTTTGACTCTGAGCTTGAACTGATGACTTACATCAATGAAAACTGGGACCGGCTTCAGCTTGGCGAG
Seq C2 exon
CTTGCAGAGACTCCGAGAGCAGAACGATATGAATGCATTCTGGAAGCACTTAACAACAACCTCGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590-'10-13,'10-11,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTCAGTTTGTAATAGTGGACCA
R:
TGTCGAGGTTGTTGTTAAGTGCT
Band lengths:
122-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]