RnoEX0056250 @ rn6
Exon Skipping
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2667660-2676581:-
Coord C1 exon
chr14:2676513-2676581
Coord A exon
chr14:2675513-2675636
Coord C2 exon
chr14:2667660-2667727
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGATTATTTTTGGATTCCAGGGT
3' ss Score
6.88
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCATTACAGTG
Seq A exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAGTACTTTGACTCTGAACTTGAGCTTATGACATACATTAATGACAACTGGGACAGATTGCACCCTGGAGAG
Seq C2 exon
CTGGCAGACACGCCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075-'18-19,'18-16,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PD(22.6=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTTATTTGCTCTGTCTGCAGT
R:
TGGTCTTGTAATCATTTAATGCCTCC
Band lengths:
130-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]