BtaEX6016585 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50991659-51011458:+
Coord C1 exon
chr3:50991659-50991817
Coord A exon
chr3:51002997-51003143
Coord C2 exon
chr3:51011363-51011458
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTATATTTTTAATTCTTAGAAC
3' ss Score
8.28
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CGCCACTTAGCTCGTACTACTGGGAGATGGAAAGACCCACCTAAGAAAAATGCCATGATTGAGTTACAAGATGAACTGATGACCATCCGACTTAGAGAAGCTGAAACACAAGCAGAAATAAGAGAAATAAAACAGAGGATGATGGAAATGGAAACACAG
Seq A exon
AACCAGATCAATAGTAATCATCTTCGAAGAGCAGAGCAAGAGGTGATCAATCTACAGGAGAAGGTGCAATATCTTTCTGCACAGAACAAAGGATTGCTTACCCAATTGAGTGAAGCAAAGCGCAAACAAGCAGAGATTGAATGCAAG
Seq C2 exon
AACAAGGAAGAAGTGATGGCTGTGAGACTCCGGGAAGCAGATAGCATAGCAGCTGTTGCTGAACTACAGCAGCACATTGCTGAGCTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=0.354 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCGTACTACTGGGAGATGG
R:
GGATTTCAAGCTCAGCAATGTGC
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]