RnoEX0033409 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2980819-2991160:+
Coord C1 exon
chr14:2980819-2980977
Coord A exon
chr14:2988677-2988823
Coord C2 exon
chr14:2991065-2991160
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCATTTACATTTCTCACTAGAAC
3' ss Score
7.86
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGTCACGTAGCTCGGACTTCTGGGAGGTGGAAAGACCCACCCAAGAGAAACGCCGTGAGTGAGCTGCAGGGTGAGCTAATGAGCATTCGCCTCAGAGAAGCGGAGACCCAGGCAGAGATGAGAGAGATGAAGCAGAGGATGATGGAGATGGAGACGCAG
Seq A exon
AACCAGATCAATAGTAACCAGCTTCGAAGAGCAGAGCAAGAGGTGACCAGTCTGCAGGAGAAGGTGTGCTCCCTGTCTCTGAAGAACAAGGGGTTGCTTGCCCAGTTGAGTGAGGCGAAGCGCAGGCAGGCAGAGATTGAATGCAAG
Seq C2 exon
AATAAGGAAGAAGTCATGGCTGTGAGGCTCCGGGAAGCTGATAGCATAGCTGCCGTCGCCGAATTACAGCAGCACATTGCTGAGCTTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'47-45,'47-43,49-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.755 A=0.306 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACGTAGCTCGGACTTCTG
R:
ATCTCAAGCTCAGCAATGTGC
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]