DreEX0030976 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29043462-29045345:-
Coord C1 exon
chr6:29045187-29045345
Coord A exon
chr6:29043923-29044069
Coord C2 exon
chr6:29043462-29043557
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTATTTGACCTGTTAACAGAAT
3' ss Score
5.81
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGGCATCTGGCACGGACGGCGGGCCGCTGGAAAGACAGTCCACGCAAGAATGCGGCAAGTGAGCTTCAGGATGAACTGATGAGTGTGAGGCTCAGAGAGGCAGAAGCACAAGCTGAGCTCAGAGAGACCAGACAGAGAATGCTGGAACTGGAGACTCAG
Seq A exon
AATCAAATACATAGTAATCAGCTTCGACGAGCAGAACTCGAGGCACGAAATCTACAGGATCGATTGCATGTTTTGAGCAACCAGAACAAGATGTTGCATTCAGAGCTGCAGGAGACAAAGCGGAAGCAGGCTGAAATAGAGTGCAAG
Seq C2 exon
AATAAAGAAGAGGTAATGGCAGTGAGATTAAGAGAAGCTGACAATATTGCTGCCATGGCTGAGCTTCAGCAGCAAATCTCTGAGCTTGAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'31-26,'31-25,32-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=0.782 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGGAAAGACAGTCCAC
R:
CTCAAGCTCAGAGATTTGCTGC
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]