HsaEX0023368 @ hg38
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92605307-92624334:-
Coord C1 exon
chr1:92624176-92624334
Coord A exon
chr1:92607581-92607727
Coord C2 exon
chr1:92605307-92605402
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTATATTTCTGATTATTAGAAC
3' ss Score
5.52
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CGCCACTTAGCTCGTACTACTGGGAGATGGAAAGACCCACCCAAGAAAAATGCTATGAATGAGTTACAAGATGAACTGATGACCATTCGACTTAGAGAAGCTGAAACACAAGCAGAAATAAGAGAAATAAAACAAAGGATGATGGAAATGGAAACACAG
Seq A exon
AACCAGATCAATAGTAACCATCTTCGAAGAGCAGAACAAGAGGTGATTAGCCTACAGGAGAAAGTGCAGTATCTTTCTGCACAGAACAAAGGACTCCTTACTCAATTAAGTGAAGCAAAGCGTAAACAAGCAGAGATTGAATGCAAG
Seq C2 exon
AATAAGGAAGAAGTGATGGCTGTGAGGCTTCGGGAAGCAGATAGCATAGCTGCTGTGGCTGAACTACGACAACACATTGCTGAGCTTGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208_MULTIEX1-19/20=17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.741 A=0.391 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000540033fB15071
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCACTTAGCTCGTACTACTG
R:
AGCTCAGCAATGTGTTGTCGT
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development