BtaEX6016969 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020761 | USP33
Description
Bos taurus ubiquitin specific peptidase 33 (USP33), mRNA. [Source:RefSeq mRNA;Acc:NM_001101139]
Coordinates
chr3:67203513-67205714:+
Coord C1 exon
chr3:67203513-67203682
Coord A exon
chr3:67204809-67204890
Coord C2 exon
chr3:67205606-67205714
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTAAACTTTTCTAGGTG
3' ss Score
10.01
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GAAGAGCAGTGAAGAAGCACAAAAAGAGAGGCGAAGAATATCAAATTTGTTGAACATAATGGAACCAAGTCTCCTTCAGTTTTATATTTCTCGACAGTGGCTAAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGATTTTCTCTGTATTCATGGAG
Seq A exon
GTGTTCCTCCACGAAAAGCTGGTTATATTGAAGACCTGGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTATATAGCAG
Seq C2 exon
GTATGGAGGAGGACCAGCCGTCAACCATCTGTACATTTGTCACACTTGCCAGATTGAAGCGGAGAAAATTGAAAAAAGAAGAAAAACTGAATTGGAAATTTTTATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020761-'27-33,'27-32,28-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(43.8=55.2)
A:
PF063377=DUSP=FE(37.0=100)
C2:
PF063377=DUSP=PD(17.8=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCAAGTCTCCTTCAGT
R:
CTCCGCTTCAATCTGGCAAGT
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]