GgaEX6044528 @ galGal4
Exon Skipping
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17906566-17911176:+
Coord C1 exon
chr8:17906566-17906735
Coord A exon
chr8:17908388-17908469
Coord C2 exon
chr8:17911068-17911176
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTGCTTCTGCAGGAG
3' ss Score
10.42
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAAGAGTAATGAAGAAGCTCAAAGAGAGAGGCGGAGAATATCAAGTCTACTGAATATGATGGAACCAAGTCTTCTGCAGTTCTATGTTTCAAGACAGTGGTTAAATAAATTCAAGACTTTTGCAGAGCCAGGACCAATTTCAAATAATGACTTCCTTTGTATGCACGGAG
Seq A exon
GAGTTCCTCCCCACAAAGCTAGCTTCATAGAGGACCTGGTTGTAATGCTACCTCAAAATATATGGGATAATCTGTATAGCAG
Seq C2 exon
GTATGGAGGAGGACCAGCGGTTAACCATCTGTATGTTTGTCATACCTGCCAAATAGAGTCTGAAAGACTTGAAAAAAGAAGGAAAAATGAATTGGAGATGTTTATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-'36-46,'36-45,37-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(44.6=56.9)
A:
PF063377=DUSP=FE(36.5=100)
C2:
PF063377=DUSP=PD(17.6=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGAGAGAGGCGGAGAAT
R:
CAGATGGTTAACCGCTGGTCC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]