RnoEX6011964 @ rn6
Exon Skipping
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257592999-257595350:+
Coord C1 exon
chr2:257592999-257593168
Coord A exon
chr2:257593892-257593973
Coord C2 exon
chr2:257595242-257595350
Length
82 bp
Sequences
Splice sites
3' ss Seq
GACTGTTAAATATTTTTTAGGTA
3' ss Score
8.77
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GAAGAGCAGTGAAGAGGCACAAAGGGAGAGGCGAAGGATATCCAATTTGTTGAACATAATGGAGCCAAGCCTCCTTCAGTTCTATATATCTCGACAGTGGTTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGACTTTCTCTGTATTCATGGAG
Seq A exon
GTATTCCTCCACGAAAAGCAAGTTATATTGAAGACTTAGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTCTACAGCAG
Seq C2 exon
GTATGGAGGAGGGCCTGCTGTCAACCACCTCTACATTTGTCACACTTGCCAAATTGAGGCAGAGAAGATTGAAAAACGAAGAAAAACTGAATTGGAAATTTTTATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294-'26-32,'26-31,27-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(43.8=55.2)
A:
PF063377=DUSP=FE(37.0=100)
C2:
PF063377=DUSP=PD(17.8=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAGGCGAAGGATATCCA
R:
CAGCAGGCCCTCCTCCATAC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]