MmuEX0050952 @ mm9
Exon Skipping
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152044679-152047188:+
Coord C1 exon
chr3:152044679-152044848
Coord A exon
chr3:152045875-152045956
Coord C2 exon
chr3:152047080-152047188
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTCATGTAAATATTTTTTAGGTA
3' ss Score
7.82
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAAGAGCAGTGAAGAGGCACAAAAGGAGAGGCGGAGGATATCAAATTTGTTGAACATCATGGAACCTAGCCTCCTTCAGTTCTACATATCTCGACAGTGGTTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGATTTTCTCTGTATCCATGGAG
Seq A exon
GTATTCCTCCACGAAAAGCGAGTTATATTGAAGACTTAGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTCTATAGCAG
Seq C2 exon
GTATGGAGGAGGGCCTGCTGTCAACCATCTCTACATCTGCCACACCTGCCAAATTGAGTTAGAGAAGATTGAAAAACGAAGAAAAACCGAATTGGAAATTTTTATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-'30-28,'30-27,33-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(43.8=55.2)
A:
PF063377=DUSP=FE(37.0=100)
C2:
PF063377=DUSP=PD(17.8=35.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGGAGAGGCGGAGGAT
R:
GAGATGGTTGACAGCAGGCC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: