BtaEX6017041 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70273628-70275573:+
Coord C1 exon
chr3:70273628-70273729
Coord A exon
chr3:70273828-70273923
Coord C2 exon
chr3:70274340-70275573
Length
96 bp
Sequences
Splice sites
3' ss Seq
CATGTTGTTTTCCATACTAGGTT
3' ss Score
9.63
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
AAATCTGTTGGTGAAAAAGGAGTTGATGTGATTATTGAAATGTTAGCTAACGTAAATCTTAGTAATGATTTGAATCTTTTGTCACACGGAGGACGAGTAATA
Seq A exon
GTTGTTGGCAGCAGAGGCACTATTGAAATAAACCCACGGGACACCATGACAAAGGAATCTAGCATAAAAGGAGTTACTCTGTTTTCATCCACCAAG
Seq C2 exon
GAGGAATTTCAGCAGTTTGCAGCAGCCCTTCAAGCCGGAATGGAAATTGGTTGGTTGAGACCGGTAATCGGTCCCCAGTATTTACTGGAGAAGGCTACCCAAGCTCATGAAAATATCATTCATAGCAGTGGGGCTACTGGAAAAATGATTCTTCTCTTAAACTGATCAGTCCTTCCATTGATTTCCTGTGTAATTAGAGGTTTCATATCTCAGTTTTATGTACACTGTTTGCTCTACTTAGCATTCATTTGATTCAGTGAGTTCCTTAACATTTAAAAAAAAGGTTTGTCTTTAGTGATCATAAGCATTGGAGTACTGTTTATTTTATAGCTGGCAACTTTCTTTATGCCTTCTACTTCTCATCAAGGAATCACTGTAATAGGAAATAGGATGTTAGTGGTCACTTGGCATTGGAGGACATTACAGAAATTCCTAACCGATACTAATCATTAATCCCATACCTTTGACTAAAACATACTAATTCAAAATAGGACTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(25.6=100)
A:
PF0010721=ADH_zinc_N=FE(24.0=100)
C2:
PF0010721=ADH_zinc_N=PD(8.5=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCACACGGAGGACGAGTA
R:
TTTCCAGTAGCCCCACTGCTA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]