MmuEX6074851 @ mm10
Exon Skipping
Gene
ENSMUSG00000028199 | Cryz
Description
crystallin, zeta [Source:MGI Symbol;Acc:MGI:88527]
Coordinates
chr3:154621481-154623182:+
Coord C1 exon
chr3:154621481-154621588
Coord A exon
chr3:154621679-154621774
Coord C2 exon
chr3:154622097-154623182
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTGTTTCCATGGTAGGTT
3' ss Score
9.33
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGTCTGTTGGTGACAAGGACAAGGGGGTTGATGTGATTATTGAGATGCTGGCGAATGAGAACCTTAGCAATGACCTGAAGCTTCTGTCCCACGGAGGACGGGTCGTC
Seq A exon
GTTGTTGGCTGTCGAGGTCCCATTGAGATAAACCCAAGGGACACCATGGCAAAAGAAACAAGCATCATTGGGGTCTCTCTCTCTTCTTCCACCAAG
Seq C2 exon
GAGGAATTTCAACAATTCGCAGGCCTTCTCCAAGCAGGAATAGAAAAAGGTTGGGTGAAACCTGTGATAGGTTCTGAGTATCCATTGGAGAAAGCAGCCCAGGCCCACGAAGATATCATTCACGGCAGTGGGAAGACGGGGAAAATGATTCTCCTCTTATGAGACCTGTGTCACTGGGCTCCTTCTTCCTCAAGTCTCTGCACCACCATCTTTAAACAGTGTTATTTGATTGAGGTTCACGTATTAAAAACAGGACTTTAGGGAGTAGACACAGTGAGTGACATAATTGCAGAGAGCAGGTGTGCCCAATGGGGTCTGCGTGCATCACAAAACTCTTTTCTTCCTTTTTCTTCATTTTCTTAGTTTGGTTGGATGTTTTTGTTTTGTGCTTGAGACAGGATCATTCTCTGTAGTTCATGCTGGCCGTGAACTCACAGTGATCTTTCTGCCTCAGCCGTCTAAATGCTGGGATAATCAGTAGTGATGCACACTACCACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028199-'22-19,'22-18,23-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(26.7=100)
A:
PF0010721=ADH_zinc_N=FE(23.7=100)
C2:
PF0010721=ADH_zinc_N=PD(8.4=20.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGAAGCTTCTGTCCCA
R:
CTTCCCACTGCCGTGAATGAT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types