GgaEX6045237 @ galGal3
Exon Skipping
Gene
ENSGALG00000011361 | CRYZ
Description
NA
Coordinates
chr8:30434765-30436375:-
Coord C1 exon
chr8:30436274-30436375
Coord A exon
chr8:30436085-30436180
Coord C2 exon
chr8:30434765-30435818
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTAACGTGGCTCTACCAGGTT
3' ss Score
6.53
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAATATACCAAGATGCAAGGAGTTAATATAATAATAGAAATGCTCTCCAATGTCAATCTGGCTGCTGACCTGCATCTGCTGTCCCATGCAGGAAGGGTGATG
Seq A exon
GTTGTCGGCTGCAGAGGTCCCATTGAGATAAATCCCAGAGACACCATGAACAAAGAGTCCAGCATAAGAGGAGTTAGTCTGTTTCTTCAGACTGAG
Seq C2 exon
GAGGAGAGACGTGAATGTGTGAGGGCAGTCCTTGATGGCATAGAGTCTGGCTGGCTGAAACCAGTGGTAGGCCCTGAGTACCCACTGCAGGAAGTAGCTAAGGCTCATGAGGACATTATTCACAGCAGTGGTGCTCGAGGAAAGATGGTACTCTTGCCATAAAGTGTTTCTCCACTTACTTTATAGCTGCTCTAACTGCACCTTTGCTTACGTGATTCATTGAATATTTTTCTATAAAATGCATTTCTAATCAGGTTTTGAGTAGAACAGCAAGTGCTAGCTTACATTAATTGATTACCTTGATTCATTAGCAATGTTTTCTTTTTGTACAAAAGCAAAATTTGTGGTGGTACTTGTAACTTTTTTTGGCTGATGTGGAAATAATAACTTTACTGATTTGACACTGTGATGGAAAACTGGCGTTGGGGAATATGGTATCTCAGCTGGAATGTGATATAAAGTATTACCTGAAGCTATTCTGAGGGCACTGGGAATCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(25.6=100)
A:
PF0010721=ADH_zinc_N=FE(24.0=100)
C2:
PF0010721=ADH_zinc_N=PD(8.5=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTGTCCCATGCAGGAA
R:
CCATCTTTCCTCGAGCACCAC
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]