DreEX6025833 @ danRer10
Exon Skipping
Gene
ENSDARG00000016074 | cryz
Description
crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
Coordinates
chr2:11319637-11326694:-
Coord C1 exon
chr2:11326593-11326694
Coord A exon
chr2:11326415-11326510
Coord C2 exon
chr2:11319637-11321207
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATCATCTCGTTCTTTTGCAGATT
3' ss Score
11.37
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GATACGACTAATGGACTTGGGGTGAATGTGATCATAGAGATGTTGTCCAACGTCAACCTGAGTAATGATCTTCAGTTGCTTGATTTCGGTGGCAGAGTTATA
Seq A exon
ATTGTTGGCTCTAGAGGCCCGATTGAGATTAACCCCAGAGACACCATGATGAAAGAGTCCAGTGTCATTGGTGTGGCTTTGCACTTTGCAACTAAG
Seq C2 exon
AGCGAAACTTCAGAGTGTGCCGCAGCTCTTTATGCAGGAATGGAGGCAGGCTGGTTGAAACCTGTAATTGGTCCAGAATACACACTTGATAAAGTGGCCCAAGCTCATGAAGATATCATCAACAGCCCCGGAGCCAGTGGAAAGATGATTTTGACCATGTGAAAATATACAGGAGGCTCAGTTTCAGTGTATAAAAACAAATTAATTATCTTTGCATTAACTGCCATATTTCTACGTCAGTGTTACAATTACACCAATATATTGCTATAGCGATAATAGTACAGGTATTGGCAATTTTCATGTCACAGATAAGTTAAATAAAATAAATTAAGTTTATGTGCCAAGCATTAGTGTGCTGCATGAAAGGGTTGCTTTTCCAAATATGACCAATCAGATGGGGCCTTATCTATCTTCATGCACATTAGCCTAATCTTAGAGCTGAAAAATTATGCTTATGATGGGAGACAAGAGAGAATAACGGCAAATAGGTATCAGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016074-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(25.8=100)
A:
PF0010721=ADH_zinc_N=FE(24.2=100)
C2:
PF0010721=ADH_zinc_N=PD(7.8=18.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCTTGATTTCGGTGGCA
R:
ATCATCTTTCCACTGGCTCCG
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]