BtaEX6018639 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017125 | PABPC4
Description
Bos taurus poly(A) binding protein, cytoplasmic 4 (inducible form) (PABPC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001083724]
Coordinates
chr3:107084063-107088098:+
Coord C1 exon
chr3:107084063-107084399
Coord A exon
chr3:107087065-107087258
Coord C2 exon
chr3:107087983-107088098
Length
194 bp
Sequences
Splice sites
3' ss Seq
AACGTGTTTCTGTTTTGCAGCTG
3' ss Score
10.59
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAGCCGACTCCCAGCTTCTCCGAGCTTCACTGCCACCTGTGAGCCGCGGCGTGGGCCACGGCTCCGAGCGGAGCCCCCTTTGTCCTGTGCGGTCCCTCTTAAGAAGTCCTCCTGGCGGGGCTCGGGGTGGTGGGGGCTGGGGAGATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGTGACCTGCACTCGGACGTCACCGAGGCCATGCTGTACGAAAAGTTCAGTCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGTTATGCCTACGTCAACTTCCAGCAGCCGGCTGACG
Seq A exon
CTGAGCGGGCCTTGGACACCATGAACTTTGATGTAATTAAGGGAAAGCCGATCCGGATCATGTGGTCTCAGAGGGATCCGTCTCTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGACAAATCTATAGATAACAAGGCACTTTATGATACTTTTTCTGCTTTTGGGAACATTCTGTCCTGCAAG
Seq C2 exon
GTGGTGTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAGGAGGCTGCCGACAAGGCCATCGAGAAGATGAACGGCATGCTCCTCAATGACCGCAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017125-'2-2,'2-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(73.2=80.0)
A:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
C2:
PF0007617=RRM_1=FE(55.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCGAGGCCATGCTGTA
R:
CTTTGCGGTCATTGAGGAGCA
Band lengths:
244-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]