DreEX0053123 @ danRer10
Exon Skipping
Gene
ENSDARG00000059259 | pabpc4
Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
Coordinates
chr17:25299607-25308292:-
Coord C1 exon
chr17:25307710-25308292
Coord A exon
chr17:25301657-25301850
Coord C2 exon
chr17:25299607-25299722
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCATCTTGTTGTGGTTTCAGCGG
3' ss Score
7.08
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACAAAATAACGAAAATCTCAAAAAATAACTACAAACCAAACAACGTTTTTTAAAGAAAAAACTTTTTTTGTTTTTTAAAAGACGAGGTCTCGATCTACCCAGTGGTTTTCTGCCAGTTCCTCCGACCGGACTCATATGCTGTAGCTGTCACTGCTGCCGAAATCGTTTATTCGGGGAGAAGCGTAAAAGTTTAATAGAGGATTAAGAGACTCATTTGTCCCACTGGTTCTCGGACACTCTTTACGCACTGTCATTTCAGCACTAGACAAACACACGGGCTCAGAGGCTTGATCGACCCCGAGACATGAACGCAGCGACCGCGGGGAGTTATCCGATGGCTTCTCTTTATGTGGGCGACCTGCACCCCGATATCACGGAGGCGATGCTGTATGAGAAATTCAGTCCGGCCGGCCCGGTGCTCTCCATCCGCGTGTGTCGGGATATGATCACGCGGCGCTCGCTGGGCTATGCCTACGTCAACTTCCAGCAGCCTGCGGACG
Seq A exon
CGGAGAGAGCTTTGGACACAATGAACTTCGATGTGGTCAAAGGAAAGCCCATCAGAATCATGTGGTCACAAAGAGATCCATCACTTAGGAAATCTGGGGTTGGAAACGTATTTATCAAAAATCTGGACAAGTCCATCGACAACAAAGCTCTGTATGACACCTTCTCTGCCTTTGGAAACATCCTGTCTTGCAAG
Seq C2 exon
GTGGTGTGCGACGAGAACGGATCGAAAGGCTATGCCTTTGTGCATTTTGAAACTCAGGACGCAGCCGATCGTGCCATTGAGAAGATGAATGGAATGTTGCTGAACGACCGCAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059259-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(73.2=78.8)
A:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
C2:
PF0007617=RRM_1=FE(55.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATCACGGAGGCGATGCTG
R:
CGGTCGTTCAGCAACATTCCA
Band lengths:
243-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]