GgaEX0005064 @ galGal3
Exon Skipping
Gene
ENSGALG00000003800 | PABPC4
Description
NA
Coordinates
chr23:5737910-5745491:-
Coord C1 exon
chr23:5745267-5745491
Coord A exon
chr23:5738466-5738659
Coord C2 exon
chr23:5737910-5738147
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTGCTTCTCTTGCAGCTG
3' ss Score
11.51
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACGCCACAGCCACGCCGAGAGCGGTGCGGGCGATGGACGCGGCGGGCAGCAGCTACCCCATGGCCTCGCTGTACGTGGGCGATCTGCACCCCGACGTCACCGAGGCCATGCTGTACGAGAAGTTCAGCCCCGCGGGGCCCGTGCTGTCCATCCGCGTGTGCCGCGATATGATCACCCGCAGATCCCTCGGCTACGCCTACGTCAACTTCCAGCAGCCGGCGGACG
Seq A exon
CTGAGCGTGCTCTAGACACCATGAACTTTGATGTGATCAAAGGAAAACCCATTCGCATCATGTGGTCTCAGAGGGACCCCTCACTGAGGAAGTCAGGGGTTGGGAACGTTTTCATTAAGAACCTGGACAAATCCATTGATAACAAGGCACTTTATGACACGTTCTCAGCGTTTGGGAATATTTTGTCCTGCAAG
Seq C2 exon
GTGGTGTGTGATGAGAATGGCTCTAAGGGCTACGCATTTGTGCACTTTGAGACCCAGGATGCTGCAGATAGAGCCATCGAGAAGATGAACGGCATGCTGCTAAACGACCGCAAAGTGTGAGTGTCACAGCCAGCAGCAGCAGCGATCGCATGAACCGTGATGCATCTCGGTATTAACAGGGACACACAAGGTTCTCCTGGCCCAAGCCTTGGCCTGCTACCTCTCCACTACAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003800_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(73.2=80.0)
A:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
C2:
PF0007617=RRM_1=FE(55.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCATGCTGTACGAGAAG
R:
ACTCACACTTTGCGGTCGTTT
Band lengths:
246-440
Functional annotations
There are 0 annotated functions for this event