GgaEX0005064 @ galGal4
Exon Skipping
Gene
ENSGALG00000003800 | PABPC4
Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:HGNC:8557]
Coordinates
chr23:5425770-5432240:-
Coord C1 exon
chr23:5432006-5432240
Coord A exon
chr23:5426204-5426397
Coord C2 exon
chr23:5425770-5425885
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTGCTTCTCTTGCAGCTG
3' ss Score
11.51
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTCCCTGCAGACGCCACAGCCACGCCGAGAGCGGTGCGGGCGATGGACGCGGCGGGCAGCAGCTACCCCATGGCCTCGCTGTACGTGGGCGATCTGCACCCCGACGTCACCGAGGCCATGCTGTACGAGAAGTTCAGCCCCGCGGGGCCCGTGCTGTCCATCCGCGTGTGCCGCGATATGATCACCCGCAGATCCCTCGGCTACGCCTACGTCAACTTCCAGCAGCCGGCGGACG
Seq A exon
CTGAGCGTGCTCTAGACACCATGAACTTTGATGTGATCAAAGGAAAACCCATTCGCATCATGTGGTCTCAGAGGGACCCCTCACTGAGGAAGTCAGGGGTTGGGAACGTTTTCATTAAGAACCTGGACAAATCCATTGATAACAAGGCACTTTATGACACGTTCTCAGCGTTTGGGAATATTTTGTCCTGCAAG
Seq C2 exon
GTGGTGTGTGATGAGAATGGCTCTAAGGGCTACGCATTTGTGCACTTTGAGACCCAGGATGCTGCAGATAGAGCCATCGAGAAGATGAACGGCATGCTGCTAAACGACCGCAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003800-'0-4,'0-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(73.2=80.0)
A:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
C2:
PF0007617=RRM_1=FE(55.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACGTGGGCGATCTGC
R:
GCATGCCGTTCATCTTCTCGA
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]