BtaEX6019056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112828983-112834842:+
Coord C1 exon
chr3:112828983-112829171
Coord A exon
chr3:112831572-112831718
Coord C2 exon
chr3:112834654-112834842
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTCCACCATCTTCCCGCAGGGC
3' ss Score
11.71
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGCACTGCCCAACGAATGAGCTTCTGACGGATTCCACAGGTGTGATCCTGAGTCAGAGCTACCCTGGCAGCTATCCCCAGTTCCAGATCTGCTCTTGGCTGGTGAGAGTGGAGCCCGAATATAACATCTCCATCACAGTGGAGTACTTTCTCAGTGAGAAGCAGTATGATGAGTTTGAGATCTTTGATG
Seq A exon
GGCCCTCGGGACAGAGTCCTCTGCTGAAAGCCCTCAGTGGGAATTACTCGGCCCCCCTGGTTGTCACCAGCTCAAGCAACTCCGTCTACCTGCGCTGGTCGTCTGACCATGCCTACAACCGGAAGGGCTTTAAGATTCGGTATTCAG
Seq C2 exon
CTCCCTACTGCAGCCTGCCCAGGGCTCCCCTCCATGGCTTCCTTCTGGGCCAGACCAGCACCCAGCCCGGAGGCTCCATCCACTTTGGCTGCAATGCCGGCTACCGCTTGGTGGGACACAGCATGGCCATTTGTACCCGGCACCCCCAGGGCTACCACCTGTGGAGTGAGGCCATTCCTCTCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'64-63,'64-62,65-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.0=95.3)
A:
PF0043115=CUB=PD(43.1=94.0)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCTGCTCTTGGCTGGTG
R:
GGGTACAAATGGCCATGCTGT
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]