GgaEX0003261 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5134264-5136205:+
Coord C1 exon
chr23:5134264-5134452
Coord A exon
chr23:5134923-5135069
Coord C2 exon
chr23:5136017-5136205
Length
147 bp
Sequences
Splice sites
3' ss Seq
ACACTCTTCCTTCCTTCCAGGTC
3' ss Score
12.59
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
TGCCCTGCCCCATGAATGCGGTGATGACGGACTCCACCGGTGTCATCCTCAGCCAGAGCTTCCTGGGAAGTTACCCTCACTTCCAGACCTGCTCTTGGGTGGTCAAGGTGGAGCCTGGCTACAACATCTCCCTTACCATCGAGTACTTCCTCAGCGAGAAGCAGTATGATGAGTTTGAGATCTTTGATG
Seq A exon
GTCCCTCTGGCCACAGCCCACTGCTCTTGTCACTGAGTGGGAACTACTCTGCCCCTCTGACTGTTACCAGCAGTGGGAACAAGGTCTATCTCCGTTGGTCCTCTGATCATGCCTACAACAGAAAAGGCTTCAAAATCCGCTACTCCG
Seq C2 exon
CTCCTTACTGCAGCCTCCCGCAGCCTCCAGCCCATGGGCTGATCCTCAGCCAGACGGGGCTGCAGCCCGGCTCCACGGTTCGCTTTGGCTGTGACAGCGGCTACCGGCTCGTGGGTCACAGCACTGCCACCTGCTCCCAGCACCCACAGGGCTACTTCCACTGGAACGAAGCGATCCCGCTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'55-57,'55-56,56-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.0=95.3)
A:
PF0043115=CUB=PD(43.1=94.0)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGGCTACAACATCTCC
R:
TTCCAGTGGAAGTAGCCCTGT
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]