DreEX6073818 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36587640-36604388:-
Coord C1 exon
chr19:36604200-36604388
Coord A exon
chr19:36597996-36598142
Coord C2 exon
chr19:36587640-36587828
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTTTGCTTCATCCTGCAGGTC
3' ss Score
11.33
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTACCTGTCCCATGAACGAGGTGCTGACGGCCTCTACAGGGGTGATCCTTAGTCAGTCTCCGGGCAGCAGCCTGCCACACTTTGAGTCCTGCTCCTGGTTGGTGAAGGTGGATTCGGGCTACAACATCACTTTCACTGTTGAACATTTTCAGACCAGCAGGCAGTTTGATGAGCTGGAAATATTTGATG
Seq A exon
GTCCGTCAAGACAGAGTCCACTGCTCATTTCTCTGAGTGGGAATTATTCTTCTCCTCTCAGCATTACTAGCTCTGCAAACAAGGTTTACCTGCACTGGTCCTTTGATCACACCTCCAGCCACAAGGGCTTTCGAATCCGCTACTCAG
Seq C2 exon
CGGCCTACTGCAGTTCTCCAGATCCTCCTGTCAATGGCTCGCTGCACAGCCAGACTGGTACGAAATTGGGCAGCACTTTGCGCTTCAACTGTGACCGAGGCTTCAACCTGATCGGCCAAACCACAGCCACCTGCTACCGCACCCCGCAGGGCATCTACCAATGGAACGCTCCAGTGCCACTTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'55-56,'55-55,56-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(56.0=95.3)
A:
PF0043115=CUB=PD(43.1=94.0)
C2:
PF0008415=Sushi=WD(100=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTAGTCAGTCTCCGGGC
R:
GTTGAAGCCTCGGTCACAGTT
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]