BtaEX6019095 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019555 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr3:112938763-112939809:-
Coord C1 exon
chr3:112939623-112939809
Coord A exon
chr3:112939123-112939199
Coord C2 exon
chr3:112938763-112938847
Length
77 bp
Sequences
Splice sites
3' ss Seq
AGATGCTTTTTCCTTCTCAGCTG
3' ss Score
7.79
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAACTGGAACTGTGTGCAGAGGATACGAGGTCCTTAAAGACAACGAAGGAATCTCAGGGCTGCCAGCTGCAGCCAGCAGATCACTGGCCTGAGGAACAGTCCCAGAAGCAGTGGGTGAAGAACTCGTGTCCTGACCTTCCCAAGAATCTAGACACCAAGATGGTGCCACAGCCCTTGAAAGAGAGTG
Seq A exon
CTGTCCTCACTCCCCGAGTCCCTGCTCTCCCAAAGACGGGGAGCGTCGGAGATTGGGAGGTGACCGCGGAGTCTCAG
Seq C2 exon
GAAGCCCTGGGTCCCGACAGACACGCTGAGAAGGAATTCTGCACGGACCCCCCAGGAGACAACTGTGGGAACGGCTTGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019555-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=1.000 C2=0.897
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAACAGTCCCAGAAGCA
R:
CGTTCCCACAGTTGTCTCCTG
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]