MmuEX6096231 @ mm10
Exon Skipping
Gene
ENSMUSG00000061894 | Zscan20
Description
zinc finger and SCAN domains 20 [Source:MGI Symbol;Acc:MGI:2679268]
Coordinates
chr4:128591473-128592506:-
Coord C1 exon
chr4:128592335-128592506
Coord A exon
chr4:128591816-128591892
Coord C2 exon
chr4:128591473-128591557
Length
77 bp
Sequences
Splice sites
3' ss Seq
CGGATTGCTCTCTTCTTCAGCTG
3' ss Score
8.31
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGACTGGAGCTATGCTCTGAAGACTCCAGGTCCTTCGAAGCAGTTCAGGAGTTCCAGAGGTTCCAGCTGCAGCCAGTGACCCACGGCTCTGAGGGCCAGCCCCGAAAACAGTGGGTGGAGAATGCACGTCCCGACCTTTCCAAGATGCCACCTGAGTCCTTGAAAGAGAGTG
Seq A exon
CTGTCCTCACACCCCAAGCCCCAACTGTTCCAAAGATGGCGAGCATTGGAGATTGGGAGGTGGCAGGCAAGTCCCAG
Seq C2 exon
GAAACCCCGAGCCCCAGTAGACAAGCCAAGAAGGAGCCCTGCCAGGACCCCGCAGGAGGTGATCGTGGGGACAGTGCGTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061894-'11-8,'11-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTTCGAAGCAGTTCAGG
R:
GGGCTCCTTCTTGGCTTGTC
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types