RnoEX0102289 @ rn6
Exon Skipping
Gene
ENSRNOG00000005886 | Zscan20
Description
zinc finger and SCAN domain containing 20 [Source:RGD Symbol;Acc:1562996]
Coordinates
chr5:146768450-146769462:-
Coord C1 exon
chr5:146769291-146769462
Coord A exon
chr5:146768773-146768849
Coord C2 exon
chr5:146768450-146768534
Length
77 bp
Sequences
Splice sites
3' ss Seq
GGCATTGCTGTCTTCTTCAGCTG
3' ss Score
7.97
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGTCTGGAGCTGTGCACTGAAGACACCAGGTCCTTTGAAGCAGTTCAGGAGTTCCAGAGGTTCCAGCTGCAGCCAGTGGCCCACTGCTCTGAGAGACAGCCCCAGAAACAGAGGGTGGAGAAGACACATCCTGGCCTTTCCAAGATGCCACCTGAGTCCTTGAAAGAGAGTG
Seq A exon
CTGTCTTCACACCCCAAGCCCCAAGTGTTCCAAAGATGGCGAGCGCTGGAGATTGGGAGATGGCAGCCAAGTCCCAG
Seq C2 exon
GAAACCCTGAGCCCCAGTAGACAAGCCCAGGAGGAGCCCTGCCAGGACCCCGAAGGAGAGGATTGTGGGAACAGTGCATGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005886-'13-9,'13-8,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.466 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGAGACAGCCCCAGAA
R:
GCATGCACTGTTCCCACAATC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]