BtaEX6019583 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000784 | MTERFD2
Description
Bos taurus MTERF domain containing 2 (MTERFD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001244226]
Coordinates
chr3:120809687-120814166:-
Coord C1 exon
chr3:120813683-120814166
Coord A exon
chr3:120811235-120811419
Coord C2 exon
chr3:120809687-120810575
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTAATGATCTTCAGGGA
3' ss Score
8.45
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTCTTTGATTGGCACCGCCTGACGCCCCTTACCTGGGCCCTCCTCGCTAGGCAGACTCCTCAGCCTGCAGGACAGAAAAGGACGGCTGCTTTTTTGTTGTGTAAGCTAATGACAGTCTCCAGTGGAGGGGGCCTTGAGGAGTCGTCCTTTGTTGAACCCCCAAAATGTGCACAGAAACCAGAGCACAGAACAGGGCTGATTCAGTGCCTCCTTGAGAAGCAGAGGACTCCTGTGTTGCAAGAGAATTTTGTCCGTTCCCTCCGGGACATGGGTTTTAGTGATGTCCATGTTAATGAACTGCTCAGCATACAGCCAGGTACCCACCCTCAACAGATGCTGGACATCATTTCAGAATTAATACTTCTGGGTTTGAATCCAGAGCCTGTGTGTGTGGCCTTGAAGAAAAGTCCTCAGTTATTGAAACTGCCTGTGATGCAAATGAAGAAGCGCTCCAGTTACCTGCGAAAGCTGGGCCTCGGAGAAG
Seq A exon
GGAAATTAAAGAGGGTGCTTTACTGTTGCCCTGAAATTTTCACCATGCGTCAGCGGGACATTGAAGTCATTGTTGGGGTCCTTAAGGAGAAGTGCCTTTTCACCGTGAAGCAAGTCACCGAGATTTTGCACAGGTGCCCGTATGTTCTTCGGGAGGACCCTGGTGAGCTGGAGTACAAATTTCAG
Seq C2 exon
TATGCCTATTTCAGGATGGGGATTAAACACGTGGACATTGTGAAGACGGACCTGCTGCAGTACTCCATGACCAAGACCAAACAGAGACACGTGTTCCTGGAGCGGCTGGGCCGGTACCAGACCCCTGACAAGAAGGGGCAGACACAGGTCCCCAACCCTTTACTGAAGGACATCCTCCGAGTTTCAGAAGCTGAGTTTCTGGCCAGAACAGCAGTTTCTTCTGCTGAGGAGTTTGAGGTTTTTAAGAAACTCTTGGCCCGGGAGGAAGAGGAGCCTGAGGGCTGCATGGCTGATGACGAGAGTCTGGATGAGGAGGAGGAGGAGGACAGGGAGGAGGAGTAGGAGCTGTGACGCATGGACTGCAGTGAAGGGAGCCCAGAGAGAGGAAAGGTTATTTTAATTTCCTCAAAGCTTTTGGAAACTTCACTTCATTCTTCTCAGGTTATTTTTTATTCTTAAACTGACCTTTTGATGAAAGAATGTTTGGAAATCACCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000784-'6-2,'6-1,8-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.248
Domain overlap (PFAM):
C1:
PF025369=mTERF=PU(42.7=59.9)
A:
PF025369=mTERF=FE(26.9=100)
C2:
PF025369=mTERF=PD(29.5=58.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGTGTGGCCTTGAAGA
R:
GTGTCTGCCCCTTCTTGTCAG
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]