MmuEX0029970 @ mm10
Exon Skipping
Gene
ENSMUSG00000026273 | Mterf4
Description
mitochondrial transcription termination factor 4 [Source:MGI Symbol;Acc:MGI:1918355]
Coordinates
chr1:93301205-93305106:-
Coord C1 exon
chr1:93304608-93305106
Coord A exon
chr1:93302718-93302902
Coord C2 exon
chr1:93301205-93301795
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTAACACTCTACAGGGA
3' ss Score
6.68
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTCCTGAGTGGCATCGTCTACTGGCCCTCTCCTGGGCCTGTTTGGTTAGGCAGACCCCTCATCTCAGAGAACAGAAACAGATGAGCCCTTCTTTGTCTTGCAAACTGACTACAGTGCCCGGTAGAGGAAGCTTTCAAGAGTTTTCCAGCATTACACCCCAAAAGTACATGCAGGAACCAGAAAACAGGACACGACTTGTTCAGTGTCTTCATGAGGAACAGAAGCCTTGTGTGGATCCTGAGTCCTTGGAGCCTGAAAAGGTCATCCGTTCCCTCCAGGACATGGGTTTTGCTGAAGCCCACATTCACAGCTTGTTTAGTATACAGCCAAGTGTCCATCCTCAACAGTTGCTGGGTATAGTTTCAGAACTCCTACTCTTGGGGTTGAACCCAGAGCCTGTATTTAATGCCTTGAAGAAAAATCCCCAGTTGCTGAAACTGTCTAGCATGCAGATGAAGAGGCGTTCCAGTTACCTTCGGAAGCTTGGCCTTGGAGAAG
Seq A exon
GGAAACTGAAGCGGGTGCTGTCCGTTTGCCCTGAGGTTTTCACCATGCATCAGCGGGACATTGACCGAGTTGTGAAGGTCCTCAGGGAGAAGTGCTTGTTCACGGCACAGCACATCACAGACGTTCTGCACAGATGCCCCACTGTTTTGCAGGAGGACCCCAACGAGCTAGAATACAAATTCCAG
Seq C2 exon
TATGCATATTTCAGGATGGGACTCACACATCTAGACATAGTCAGGACGAATTTCTTACAGTATTCAATAACCAAGATCAAGCAGAGACACATTTACCTGGAGCGCCTTGGACGGTACCAGACCCCTGATAAGAAGGGGCAGACACAGATCCCTAATCCCTCACTGAGGAACATTCTCAGAGTTTCTGAAGCTGAGTTTTTGGCCAGGACAGCCTGTTCCTCTGTCGAGGAGTTTCAAGTTTTTAAAAAACTCTTGGATCAAGAGGAGGAGGAGGAGTCTGAGAGCCATGCATCTGAGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGCTACTGTGACACAGCACTGGGGTGTCAGAGGTCATTCTCATATTCTCGAAGTGCTGGGGACCTTCACCTGGATCTTCTCAAGCACTTTTGATCCCAACACTGGTATTTTGATGGGGGAAAAAACCAACCTGTAATGATCCACTGGAGATACAGGTAGATAAACCAAACCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026273_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.297
Domain overlap (PFAM):
C1:
PF025369=mTERF=PU(44.7=62.9)
A:
PF025369=mTERF=FE(26.0=100)
C2:
PF025369=mTERF=PD(28.5=59.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGTTCCAGTTACCTTCG
R:
GTCCTGGCCAAAAACTCAGCT
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types