RnoEX0056246 @ rn6
Exon Skipping
Gene
ENSRNOG00000037376 | Mterf4
Description
mitochondrial transcription termination factor 4 [Source:RGD Symbol;Acc:1562440]
Coordinates
chr9:100440486-100444410:-
Coord C1 exon
chr9:100443912-100444410
Coord A exon
chr9:100442035-100442219
Coord C2 exon
chr9:100440486-100441078
Length
185 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTTATATTCTACAGGGA
3' ss Score
8.5
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTCCTGAATGGCATCGTCTAATGGCCCTTTCCTGGGCCTGTTTGGCTAGGCAGACCTGTCATTTCAGAAAAGAGAAAAAGATGAGTCCTTCTTTGTTTTGTAAACTGACTACAGTACCCAGTAGAGGGAACTTTCAAGAGTTTTCCAGCGTTAGACCCAAAAAGTACATGCAGGAACCAGAACACAGGACACGTCTTGTTCCGTGTCTTCATGAGGAACAGAGGACATGTATGGGTTCTGAGTCCTTGGAGCTTGAAAGGGCCATCAGTTCCCTCCAGGACATGGGTTTTGCTGAAGCCCATATTGACAGCTTGCTCAATATACAACCAAGTGTCCATCCTCAACAGTTGCTGGACATAATTTCAGAACTTCTACTCTTGGGGTTGAACCCAGAGCCTGTATTTATGGCCTTGAAGAAAAATCCCCAGTTGCTGAAACTGTCTGCCACGCAAATGAAGAGGCGTTCCAGTTACCTTCGGAAGCTCGGCCTTGGAGAAG
Seq A exon
GGAAACTGAAGCGGGTGCTTTCTGTTTGCCCTAAGGTTTTCACCATGCGTCAGCAGGACATTGATAATATTGTAAAAGTCCTCAAGGAGAAGTGCTTGTTCACAGTACAGCACATCACTGACATTCTGCACAGATGCCCAGCTGTTTTGCAGGAGGACCCCAGTGAGCTAGAATACAAATTCCAG
Seq C2 exon
TATGCATATTTCAGGATGGGACTGACACATCTAGACATCGTCAGGACCGATTTCCTACAGTATTCAATAGCCAAGGTCAAGCAGAGACACATTTACTTGGAGCGCCTTGGACGGTACCAAACCCCTGATAAGAAGGGGCAGACACAGATCCCTAATCCCTCACTGAAGAACATTCTCAGAGTTTCTGAAGCTGAGTTTTTGGCCAGGACAGCCTGTTCCTCTGCTGAGGAGTTTGAAGTTTTTAAAAAGCTCTTGGATCAAGAGGAGGAGGAGTCTGAGAGCCATATGTCTGAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGAGGAGCTGCCGTGACAGAGCACTGGGATGTCAGAGGTCATTCTCATGTTCCTGAAGCACTGGGGAGCTTCACCTGGATCTTCTCAAGCACTTTTGATCCCAACACTGTTTGATAAAGGAAAAAACAAAAAAACAAAACAAAACAAAAAAAACCCCAGCCAACCTGCAGTGATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037376_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.304
Domain overlap (PFAM):
C1:
PF025369=mTERF=PU(45.8=65.9)
A:
PF025369=mTERF=FE(25.4=100)
C2:
PF025369=mTERF=PD(27.9=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGTTCCAGTTACCTTCG
R:
GTCCTGGCCAAAAACTCAGCT
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]