DreEX0006080 @ danRer10
Exon Skipping
Gene
ENSDARG00000079124 | MTERF4
Description
mitochondrial transcription termination factor 4 [Source:HGNC Symbol;Acc:HGNC:28785]
Coordinates
chr2:44697683-44704320:+
Coord C1 exon
chr2:44697683-44698064
Coord A exon
chr2:44701246-44701430
Coord C2 exon
chr2:44703905-44704320
Length
185 bp
Sequences
Splice sites
3' ss Seq
GAGTCTGAATGTGTCCACAGGTA
3' ss Score
7.32
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGGTGCGATGGCTGTGGAGATGGAGTGCATGTCCTGTGGTGATGAACAGAGGTCATATGCCGTTCTGCTCCACACAGCAAGAGCCCCGTCATCTGAATTCGTCCCACAGCAGTCAGATGCCCCACAGCCCTGTGAATCAGCTCACCTTATGTTCTTTACTCCAGATGGGCTTCTCACAGACTCAAGCCGAGGAGATGCATGAAGCAGCCCTGAAGAGCCGCGGCAAACATGTACCTTCAGTTCTCACAGCGCTCTTCGTCCTGGGCTTCAATCCCTCCAGCGTGCTGAAAATACTGCAGAAGTGTCCTGAGGTGTATTCGGCTAAAGGTGAAGAGCTGCAGCAGCGCATCCTTAATCTGAGGAAGATGGGATTGGTAGAAG
Seq A exon
GTAGTTTACAGAGGATGATCAGTCACTACCCCAAAGTCATGGTCCTGCCATTAAAAAGGGTAAACGCAGTATCGCGATTGCTCAAAGAAAAATGCCACTTCACCACCCAACAAGTCACAGAAATCCTCCGAAACTCTCCTGAGGTTTTGGAGGAGGATTTAGCCCAGCTGGAGTACAAGATTCAG
Seq C2 exon
TATACATATTTCCGTATGGGCGTTCGGCAAGCAGAAATGGTAAAGTCGAAGCTGTTCAGATTACCTGTGTCTGAGCTGCGGTGTCGACACAGTTTTCTGGAGAGAAGAGGACTGTACCAGACGCCAGACAAAAAGGGTCAAACCCTCATCCTCAACCCTCCGCTCAAAGACATCCTCTGCGCCTCTGAGGAAACATTTCTGATGCAGGTCGCCTCCGCAAATGCAGAAGAGTTCAATGCTTTTCGCAAGCTGATAGCAAGAGAGCTGGAGGAAGAAGACAAAGATGAATACAGCAGCAGTGATGAGGATGATGATGAAGATGATGATGATGAACAGCACAGAAGGAAGCCTCACTAGAAAATATATTATAAGCCGGGCATGAAATGAGGCAATAAAGGGATATTTCATACAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079124-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.000 C2=0.237
Domain overlap (PFAM):
C1:
PF025369=mTERF=PU(39.0=64.8)
A:
PF025369=mTERF=FE(28.6=100)
C2:
PF025369=mTERF=PD(31.5=56.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGAGGTGTATTCGGCT
R:
GTCTTTGAGCGGAGGGTTGAG
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]