BtaEX6020332 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003021 | SP1
Description
Bos taurus Sp1 transcription factor (SP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001078027]
Coordinates
chr5:26775008-26803416:-
Coord C1 exon
chr5:26803262-26803416
Coord A exon
chr5:26801441-26802956
Coord C2 exon
chr5:26775008-26775176
Length
1516 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTATTTCTGGCCAGGAA
3' ss Score
8.05
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACCAAGATCACTCCATGGATGAAATGACAGCAGTGGTGAAGATTGAAAAAGGAGTTGGTGGCAATAACGGGGGCAATGGAAATGGTAGTGGTGCCTTTTCTCAGGCTCGAAGCAGCAGCGCAGGCAGTAGCAGCAGCAGCGGAGGAGGAGGGCAG
Seq A exon
GAATCCCAGCCATCCCCTTTGGCTCTGCTGGCAGCAACTTGCAGCAGAATTGAGTCACCCAATGAAAACAGCAACAACTCCCAGGGCCCAAGCCAGTCAGGGGGCACAGGTGAGCTTGACCTCACAGCCACACAACTTTCCCAGGGTGCCAATGGCTGGCAGATCATCTCTTCCTCCTCTGGGGCTACCCCTACCTCGAAGGAACAGAGTGGCAGCAGTACCAACGGCAACAATGGCAGTGAGTCTTCCAAGAATCGCACGGTCTCCGGTGGGCAGTATGTTGTGGCTGCCACTTCCAACCTTCAGAACCAGCAAGTCCTGACCGGACTACCTGGAGTGATGCCTAATATTCAGTATCAAGTAATCCCACAGTTCCAGACCGTTGATGGGCAACAGCTGCAGTTTGCTGCCACTGGGGCCCAAGTGCAGCAGGATGGTTCAGGTCAGATACAGATCATACCAGGTGCAAACCAACAGATCATCACAAACCGAGGAAGTGGAGGCAACATCATTGCTGCTATGCCAAACCTACTCCAGCAGGCTGTCCCCCTTCAAGGCCTGGCTAATAATGTACTCTCAGGACAGACTCAGTATGTGACCAACGTACCAGTGGCCCTGAATGGGAATATTACCTTGCTGCCTGTCAACAGCGTTTCTGCAGCTACCTTGACTCCTAGCTCTCAGGCAGTCACGATTAGCAGCTCTGGGTCCCAGGAGAGTGGCTCACAGCCTGTCACCTCAGGGACTGCCATCAGTTCTGCCAGTTTGGTATCTTCACAAGCCAGTTCCAGCTCCTTTTTCACCAATGCCAATAGCTACTCAACAACTACTACCACCAGCAACATGGGAATTATGAACTTTACCACCAGCGGATCAGCAGGGACCAGCTCTCAGAGCCAGACACCCCAGAGGGTCAGCGGGCTGCAGGGATCTGATACTCTGAACATCCAGCAGAACCAGACATCTGGAGGTTCACTGCAAGCAAGTCAACAAAAAGAGGGAGAGCAAAACCAGCAGACACAGCAACAACAACAAATTCTCATCCAGCCTCAGCTGGTTCAAGGGGGACAGGCCCTTCAGGCCCTCCAAGCCGCCCCATTGTCAGGGCAGACCTTTACAACTCAAGCTATCACCCAGGAAACCCTCCAGAACCTTCAGCTTCAGGCTGTTCCAAACTCTGGCCCCATCATCATCCGGACACCAACAGTGGGGCCCAATGGACAGGTCAGCTGGCAGACTCTTCAGCTGCAGAACCTCCAAGTTCAGAACCCACAAGCCCAGACAATCACCTTGGCCCCAATGCAGGGTGTTTCTTTGGGGCAGACCAGCAGCAGCAGTACCACCCTTACACCTATTGCCTCAGCTGCCTCCATCCCTGCCGGCACAGTCACTGTGAATGCTGCTCAGCTCTCCTCCATGCCTGGCCTCCAGACCATTAACCTCAGTGCATTGGGTGCTTCAGGAATCCAGGTGCACCAGCTTCCAAGCCTGCCCTTGGCGATAGCAAATGCCTCAG
Seq C2 exon
GTGATCATGGAGCTCAGCTTGGCCTCCATGGGGCTGGTGGTGATGGAATACATGATGACCCAACAGGTGGAGAAGAAGGAGAGAACAGCCCAGATCCCCAACCCCAAGCTGGTCGGAGGACCCGGCGGGAAGCATGCACCTGCCCCTACTGTAAAGACAGTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003021-'3-5,'3-1,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.510 C2=0.702
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGATCACTCCATGGATGA
R:
CTTTACAGTAGGGGCAGGTGC
Band lengths:
311-1827
Functional annotations
There are 1 annotated functions for this event
PMID: 11904305
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, mutation analysis, protein kinase assay. ELM ID: ELMI001445; ELM sequence: IIRTPTV; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]