BtaEX6020599 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013555 | ACVR1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSQ2]
Coordinates
chr5:28045528-28051459:-
Coord C1 exon
chr5:28051211-28051459
Coord A exon
chr5:28048202-28048432
Coord C2 exon
chr5:28045528-28045695
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTCTTTGGTCCCCAGGGT
3' ss Score
10.56
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCACCTCAAGGAGCCTGAGCACCCCTCCATGTGGGGGCCTGTGGAGCTGGTGGGCATTATTGCCGGCCCAGTGTTCCTCCTCTTTCTCATCATCATCATTGTTTTCCTCGTCATTAACTATCATCAGCGTGTCTATCACAACCGCCAGAGGCTGGACATGGAGGACCCCTCGTGTGAGATGTGTCTCTCCAAGGACAAGACGCTCCAGGACCTGGTCTATGACCTCTCCACGTCAGGGTCTGGCTCAG
Seq A exon
GGTTACCCCTTTTTGTCCAGCGCACAGTGGCCCGGACCATCGTTCTACAGGAAATTATTGGCAAGGGCCGGTTTGGAGAAGTGTGGCGCGGCCGCTGGCGGGGCGGTGATGTGGCTGTGAAAATATTCTCTTCTCGGGAGGAACGGTCTTGGTTCCGGGAAGCAGAGATATACCAGACAGTCATGCTTCGCCATGAGAACATCCTCGGGTTCATCGCCGCTGACAATAAAG
Seq C2 exon
ATAACGGCACCTGGACACAGCTGTGGCTCGTGTCGGACTATCACGAGCACGGCTCCCTGTTTGACTATCTGAACCGGTACACGGTGACCATCGAGGGGATGATCAAGCTGGCCTTGTCTGCCGCCAGCGGGCTAGCACACCTGCACATGGAGATCGTGGGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013555-'8-7,'8-2,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=20.2)
A:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
C2:
PF0006920=Pkinase=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGTGTTCCTCCTCTTTC
R:
ACAAGGCCAGCTTGATCATCC
Band lengths:
300-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]