Special

MmuEX6056601 @ mm10

Exon Skipping

Gene
Description
activin A receptor, type 1B [Source:MGI Symbol;Acc:MGI:1338944]
Coordinates
chr15:101194809-101202145:+
Coord C1 exon
chr15:101194809-101195057
Coord A exon
chr15:101198784-101199014
Coord C2 exon
chr15:101201978-101202145
Length
231 bp
Sequences
Splice sites
3' ss Seq
CTCTATTCTTTGGCCTACAGGGT
3' ss Score
7.51
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACACCTCAAGGAGCCTGCGCACCCCTCCATGTGGGGCCCTGTGGAGCTGGTCGGCATCATCGCCGGCCCCGTCTTCCTCCTCTTCCTTATCATTATCATCGTCTTCCTGGTCATCAACTATCACCAGCGTGTCTACCATAACCGCCAGAGGTTGGACATGGAGGACCCCTCTTGCGAGATGTGTCTCTCCAAAGACAAGACGCTCCAGGATCTCGTCTACGACCTCTCCACGTCAGGGTCTGGCTCAG
Seq A exon
GGTTACCCCTTTTTGTCCAGCGCACAGTGGCCCGAACCATTGTTTTACAAGAGATTATCGGCAAGGGCCGGTTCGGGGAAGTATGGCGTGGTCGCTGGAGGGGTGGTGACGTGGCTGTGAAAATCTTCTCTTCTCGTGAAGAACGGTCTTGGTTCCGTGAAGCAGAGATCTACCAGACCGTCATGCTGCGCCATGAAAACATCCTTGGCTTTATTGCTGCTGACAATAAAG
Seq C2 exon
ATAATGGCACCTGGACCCAGCTGTGGCTTGTCTCTGACTATCACGAGCATGGCTCACTGTTTGATTATCTGAACCGCTACACAGTGACCATTGAGGGAATGATTAAGCTAGCCTTGTCTGCAGCCAGTGGTTTGGCACACCTGCATATGGAGATTGTGGGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000532_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF085157=TGF_beta_GS=PU(58.6=20.2)
A:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
C2:
PF0006920=Pkinase=FE(19.4=100)


Main Inclusion Isoform:


Main Skipping Isoform:
ENSMUST00000000544fB5345


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCTTCCTCCTCTTCCTT
R:
GCTGCAGACAAGGCTAGCTTA
Band lengths:
305-536
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types