GgaEX7011844 @ galGal4
Exon Skipping
Gene
ENSGALG00000014631 | ACVR1B
Description
activin A receptor, type IB [Source:HGNC Symbol;Acc:HGNC:172]
Coordinates
chrLGE22C19W28_E50C23:2566-5344:-
Coord C1 exon
chrLGE22C19W28_E50C23:5096-5344
Coord A exon
chrLGE22C19W28_E50C23:3060-3290
Coord C2 exon
chrLGE22C19W28_E50C23:2566-2736
Length
231 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCTTTTTCTTTGTAGGTT
3' ss Score
11.81
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GACACCTGAAGGACAACGAGCCCCCATCAAGCTGGGGTCCGGTGGAGCTGGTGGCAGTGATTGCTGGGCCCGTCTTCCTCGTCTTCGTGGTCGTCATCATTGTTGTCTTCGTGTTTCATCACCACCAGCGCGTCTATCACAACCGGCAGCGGCTGGACATGGAGGACCCCTCTTGTGAAATGTGCCTGTCGAAGGACAAGACGCTGCAAGATCTCGTCTACGATCTCTCCACCTCTGGCTCTGGCTCAG
Seq A exon
GTTTGCCACTTTTTGTGCAGCGGACCGTGGCTCGGACGATCGTCCTGCAGGAGATCATTGGGAAGGGCCGCTTTGGGGAGGTGTGGCGCGGCCGATGGCGCGGAGGTGACGTGGCTGTGAAGATCTTCTCTTCCCGTGAGGAACGTTCCTGGTTCAGGGAAGCAGAAATCTACCAAACCGTTATGCTGCGACATGAGAACATCCTGGGCTTCATTGCTGCAGACAACAAAG
Seq C2 exon
CAGACAACGGGACGTGGACACAGCTGTGGCTCGTCTCCGATTACCACGAGCACGGATCTCTCTTTGACTACCTGAACCGCTACACGGTGACCATAGAGGGGATGATCAAGCTTGCTCTGTCTGCTGCCAGCGGGCTGGCCCACCTGCACATGGAGATCGTGGGTACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631-'5-5,'5-4,6-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=20.2)
A:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.1=82.1)
C2:
PF0006920=Pkinase=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCTTCGTGGTCGTCATC
R:
CAGCAGACAGAGCAAGCTTGA
Band lengths:
298-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]