RnoEX0006460 @ rn6
Exon Skipping
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142839934-142847819:+
Coord C1 exon
chr7:142839934-142840182
Coord A exon
chr7:142844398-142844628
Coord C2 exon
chr7:142847652-142847819
Length
231 bp
Sequences
Splice sites
3' ss Seq
CTCTATTCTTTGGCCCACAGGGT
3' ss Score
8.9
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GACACCTCAAGGAGCCTGAGCACCCCTCCATGTGGGGCCCTGTGGAGCTGGTCGGCATCATTGCCGGTCCTGTCTTCCTCCTCTTCCTCATCATCATCATCGTCTTCCTGGTCATCAACTATCATCAGCGTGTCTACCACAACCGCCAAAGACTGGACATGGAGGACCCCTCATGTGAGATGTGTCTCTCCAAAGACAAGACGCTCCAGGATCTCGTCTACGATCTCTCCACTTCAGGATCGGGCTCAG
Seq A exon
GGTTACCCCTTTTTGTCCAGCGCACAGTGGCCCGAACCATTGTTTTACAAGAGATTATCGGCAAGGGCCGGTTTGGGGAAGTATGGCGTGGCCGCTGGAGGGGTGGTGATGTGGCTGTGAAAATCTTCTCTTCCCGTGAAGAGCGGTCGTGGTTCCGGGAGGCAGAGATCTACCAGACTGTCATGCTGCGCCATGAAAACATCCTTGGGTTTATTGCTGCTGACAATAAAG
Seq C2 exon
ACAATGGCACCTGGACCCAGCTGTGGCTTGTCTCTGACTATCACGAGCACGGCTCACTGTTCGATTATCTGAACCGCTACACAGTGACCATTGAGGGGATGATTAAACTGGCCCTGTCTGCAGCCAGTGGTTTGGCACACCTGCATATGGAGATTGTGGGCACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934-'8-9,'8-6,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=20.2)
A:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
C2:
PF0006920=Pkinase=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATTGCCGGTCCTGTCTT
R:
TCCCCTCAATGGTCACTGTGT
Band lengths:
293-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]