BtaEX6020628 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28515737-28528416:-
Coord C1 exon
chr5:28528335-28528416
Coord A exon
chr5:28516695-28516841
Coord C2 exon
chr5:28515737-28515872
Length
147 bp
Sequences
Splice sites
3' ss Seq
GACCTTCTGCTTCTTTTCAGGCC
3' ss Score
10.78
5' ss Seq
ACGGTAACA
5' ss Score
6.72
Exon sequences
Seq C1 exon
AGACCAGATGAAGAAGCTGTGGTGGATCAGGGTGGGACCAGCACAATTCTCAACATCCACTATGAGAAGGAAGAGTTGGAAG
Seq A exon
GCCATAGGACCCTGTACGTGGGGGTCCGGATGCCACTGGGCCGGCAAAGCCATCGGCACCACCGAACGCACGGTCAGAAGCACCGGAGACGAATGCGGGGCAAGGGAGCCAGCCAGGGGGAGGAAGGCCCAGAGGCCCTGGCCCACG
Seq C2 exon
ACACACCATCTCAGCGTGTTCAGTTCATTCTTGGCACTGAGGAGGATGAAGAACATGTGCCTCATGACCTCTTCACAGAGCTGGATGAGATCTGTCTGAAAGAGGGAGAAGATGCTGAGTGGAAGGAGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=0.900 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGATGAAGAAGCTGTGG
R:
CTGGCTGTCTCCTTCCACTCA
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]