RnoEX0082875 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142414404-142427557:+
Coord C1 exon
chr7:142414404-142414485
Coord A exon
chr7:142426595-142426744
Coord C2 exon
chr7:142427422-142427557
Length
150 bp
Sequences
Splice sites
3' ss Seq
AGTCTTCTGCTTCCATCCAGGTC
3' ss Score
9.17
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
AGACCAGATGAGGAAGCTGTGGTGGATCAGGGTGGGACCAGCACGATTCTCAACATTCACTATGAGAAAGAAGAGTTGGAAG
Seq A exon
GTCATAGAACTCTGTATGTGGGGGTTCGGATGCCACTGGGGAGGCAGAGCCATCGTCACCACCGAACTCATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGGGCTTGGAAGCCTCCGCCCACG
Seq C2 exon
ACACCCCGTCTCAGCGCGTACAGTTCATTCTTGGCACTGAGGAAGATGAGGAGCACGTTCCTCATGAGCTGTTCACAGAGCTGGACGAGATCTGTATGAAAGAGGGGGAAGAAGCCGAATGGAAGGAAACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'2-2,'2-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=0.922 C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGATGAGGAAGCTGTG
R:
CTGGCCGTTTCCTTCCATTCG
Band lengths:
218-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]