DreEX6023339 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40375440-40377763:+
Coord C1 exon
chr6:40375440-40375521
Coord A exon
chr6:40375640-40375801
Coord C2 exon
chr6:40377628-40377763
Length
162 bp
Sequences
Splice sites
3' ss Seq
GCTGTATCGTTTGACCACAGGTC
3' ss Score
6.7
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
AGGCCTGGTGAGGAAGCAGTGGTGGACCATGGAGGCACTAGCTCAGTTCTGAATATCCATTATGAGAAAGAAGAGCTCGAGG
Seq A exon
GTCACAGGACTCTTTTTGTGGGTGTGCGGATGCCCATGGACAGACCGTCTCACCGTCATCACCGGCCGCACAGTTCCAGACACCGCCGCAGATCTGACAGGATGAGGGCTGGAGGCTCAGCTCAGGACGACGACAACTCAGAAAGTACCCCAGGGGCACACG
Seq C2 exon
ATACTCCATCCCAGAGGGTTCGGTTTATTCTGGGCACTGAGGAGGACGAGGAGCATGTGGCACATGAACTCTTCACAGAGCTTGATGAAATCTGTGTTAAAGAGGGCAAAGATGCAGAGTGGAAAGAAACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=0.982 C2=0.326
Domain overlap (PFAM):
C1:
PF079317=CPT=FE(28.1=100)
A:
PF079317=CPT=FE(56.2=100)
C2:
PF079317=CPT=PD(1.0=2.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTGGTGAGGAAGCA
R:
CTTGCAGTTTCTTTCCACTCTGC
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]