MmuEX6056571 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100774630-100783922:+
Coord C1 exon
chr15:100774630-100774711
Coord A exon
chr15:100782946-100783095
Coord C2 exon
chr15:100783787-100783922
Length
150 bp
Sequences
Splice sites
3' ss Seq
AGTCTTCTGCTTCCATCCAGGTC
3' ss Score
9.17
5' ss Seq
ACGGTAACA
5' ss Score
6.72
Exon sequences
Seq C1 exon
AGGCCAGATGAGGAAGCTGTGGTGGATCAGGGTGGGACCAGCACAATTCTCAACATTCACTATGAGAAAGAAGAGTTGGAAG
Seq A exon
GTCATAGAACTCTGTATGTGGGGGTTCGGATGCCGCTGGGGAGGCAGAGCCATCGGCACCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGAGGGCGGGGCAAAGGAGCCAGCCAGGGCGAGGAGGGCTTGGAAGCCTTGGCCCACG
Seq C2 exon
ACACCCCGTCTCAGCGTGTTCAGTTCATTCTTGGCACTGAGGAAGATGAAGAACATGTGCCTCATGAGCTCTTCACAGAGCTGGACGAGATCTGTATGAAAGAGGGGGAAGATGCTGAGTGGAAGGAGACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'7-10,'7-9,14-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=0.910 C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCAGATGAGGAAGCTGT
R:
CTGGCCGTCTCCTTCCACTC
Band lengths:
218-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types