BtaEX6020983 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021808 | CACNB3
Description
Bos taurus calcium channel, voltage-dependent, beta 3 subunit (CACNB3), mRNA. [Source:RefSeq mRNA;Acc:NM_174509]
Coordinates
chr5:31120812-31121857:-
Coord C1 exon
chr5:31121735-31121857
Coord A exon
chr5:31121178-31121293
Coord C2 exon
chr5:31120812-31120876
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCACCCCACCCCTAGAAA
3' ss Score
7.61
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CACAAACCTGTGGCGTTTGCTGTGAGGACCAATGTCAGCTACTGTGGTGTACTGGATGAGGAGTGTCCGGTCCAGGGCTCTGGAGTCAACTTTGAGGCCAAAGACTTTCTGCACATTAAAGAG
Seq A exon
AAATACAGCAATGACTGGTGGATCGGGCGGCTAGTGAAAGAGGGCGGAGACATCGCCTTCATCCCCAGCCCCCAGCGCCTCGAGAGCATCCGACTCAAGCAGGAGCAGAAGGCCAG
Seq C2 exon
GAGATCTGGGAACCCATCCAGCCTGAGTGACATTGGCAGCCGACGCTCCCCACCTCCATCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021808-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.231 C2=1.000
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.3=2.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTGTGGCGTTTGCTG
R:
CTAGAGATGGAGGTGGGGAGC
Band lengths:
186-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]