RnoEX0016180 @ rn6
Exon Skipping
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140320105-140321093:+
Coord C1 exon
chr7:140320105-140320227
Coord A exon
chr7:140320644-140320756
Coord C2 exon
chr7:140321029-140321093
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTCTTATTCCCTCCCAGAAGTAC
3' ss Score
1.2
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CACAAACCTGTGGCATTTGCTGTGAGGACCAATGTCAGCTACTGTGGAGTTCTGGATGAGGAATGCCCAGTCCAGGGCTCTGGAGTCAACTTCGAGGCCAAAGATTTTCTGCACATTAAAGAG
Seq A exon
TACAGCAATGACTGGTGGATCGGGAGGCTAGTGAAAGAAGGTGGCGATATTGCCTTCATCCCCAGCCCCCAACGCCTGGAGAGCATCCGGCTCAAACAGGAACAGAAGGCCAG
Seq C2 exon
GAGATCCGGGAACCCTTCCAGCCTGAGTGACATTGGCAACCGACGTTCCCCTCCTCCATCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274-'12-12,'12-11,13-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.231 C2=1.000
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.3=2.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCTGTGGCATTTGCTG
R:
TAGAGATGGAGGAGGGGAACG
Band lengths:
186-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]