GgaEX7011033 @ galGal4
Exon Skipping
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4113756-4114337:-
Coord C1 exon
chr27:4114215-4114337
Coord A exon
chr27:4113910-4114046
Coord C2 exon
chr27:4113756-4113832
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTGTCCATTCCCTGGTGCAGAAG
3' ss Score
6.17
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
Exon sequences
Seq C1 exon
ACGAAGCCAGTTGCATTTGCTGTCCGGACAAATGTCGGCTACAACCCGTCTGCCAATGATGATGTGCCTGTGCAGGGCATGGCCATCTGCTTTGAGCCCAAAGACTTCTTGCACATCAAGGAG
Seq A exon
AAGTACAACAACGACTGGTGGATCGGGCGGCTGGTGAAGGAGGGCTGCGAGGTCGGCTTCATCCCCAGCCCTGTCAAACTGGAGAACATGCGGCTGCTGCAGGAGCAGAAGATGAGGCAGAACCGACTGAGCTCCAG
Seq C2 exon
CAAATCGGGTGACAACTCCAGCTCCAGCCTTGGCGACGTGGTGACGGGGACGCGCAGGCCCACCCCTCCGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.348 C2=1.000
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
A:
PF0001823=SH3_1=PD(51.2=47.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCCAGTTGCATTTGCTG
R:
GTCCCCGTCACCACGTCG
Band lengths:
173-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]