RnoEX6049447 @ rn6
Exon Skipping
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85964726-85965824:-
Coord C1 exon
chr10:85965702-85965824
Coord A exon
chr10:85965030-85965166
Coord C2 exon
chr10:85964726-85964802
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTCTCTTGTTCACAGAAA
3' ss Score
8.71
5' ss Seq
CAGGTGTCC
5' ss Score
3.16
Exon sequences
Seq C1 exon
ACCAAACCAGTGGCCTTTGCTGTTCGGACAAATGTTGGCTACAATCCGTCTCCAGGAGATGAGGTGCCAGTGCAGGGAGTGGCCATCACCTTTGAGCCCAAGGACTTCCTGCACATCAAGGAG
Seq A exon
AAATACAATAATGACTGGTGGATCGGGAGGCTGGTGAAGGAAGGCTGTGAGGTTGGTTTCATCCCCAGCCCTGTCAAACTGGACAGCCTTCGCCTGCTGCAGGAACAGACGCTGCGCCAAAACCGCCTCAGCTCCAG
Seq C2 exon
CAAGTCAGGTGACAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCCGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518-'15-5,'15-4,18-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.196 C2=1.000
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
A:
PF0001823=SH3_1=PD(51.2=47.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCAGTGGCCTTTGCTGTT
R:
GTGCCAGTCACCACATCTCC
Band lengths:
171-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]