GgaEX0018913 @ galGal3
Exon Skipping
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36973395-36977520:-
Coord C1 exon
chr7:36977398-36977520
Coord A exon
chr7:36974852-36974982
Coord C2 exon
chr7:36973395-36973471
Length
131 bp
Sequences
Splice sites
3' ss Seq
GAAACCTTTCTGTGTTCCAGAAA
3' ss Score
8.06
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCCAAACCAGTAGCGTTTGCTGTTAAGACCAATGTGAGTTACTGTGGAGCTCTGGATGAAGATGTCCCTGTCCCAAGCACTGCCATCTCTTTTGATGCGAAGGACTTCCTACACATTAAAGAG
Seq A exon
AAATACAATAATGACTGGTGGATAGGGAGACTGGTGAAGGAGGGCTGCGAAATTGGTTTCATTCCGAGCCCGCTTAGACTGGAGAATATCCGCATCCAGCAGGAGCAGAAGAGAGGACGTTTCCATGGAGG
Seq C2 exon
GAAATCAAGTGGGAATTCTTCTTCAAGTCTTGGAGAAATGGTTTCCGGCACGTTTCGAGCCACACCTACTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511-'2-6,'2-4,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.220 C2=0.972
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3),PF0308010=DUF239=PU(26.3=75.6)
A:
PF0001823=SH3_1=PD(51.2=50.0),PF0308010=DUF239=FE(36.4=100)
C2:
PF0308010=DUF239=FE(22.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAACCAGTAGCGTTTGC
R:
TGGAAGTAGGTGTGGCTCGAA
Band lengths:
197-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]